STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2209Geranylgeranyl reductase; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR003042:IPR006076:IPR011777; KEGG: mta:Moth_0808 geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; SPTR: Q2RKB3 Geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family. (388 aa)    
Predicted Functional Partners:
Deba_2207
Hypothetical protein; InterPro IPR011990:IPR013026:IPR019734; KEGG: cvi:CV_0900 hypothetical protein; SPTR: Q7NZM2 Putative uncharacterized protein.
       0.724
Deba_2208
Septum formation initiator; InterPro IPR007060; KEGG: mxa:MXAN_3704 cell division protein FtsB; PFAM: Septum formation initiator; SPTR: Q08NE1 Septum formation initiator subfamily; PFAM: Septum formation initiator.
       0.724
Deba_2390
COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014729:IPR012255:IPR014730; KEGG: sfu:Sfum_1372 electron transfer flavoprotein beta-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: C8QXY1 Electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein domain.
 
 
 0.710
Deba_2389
COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterProIPR014729:IPR017896:IPR017900:IPR001450:IPR 014730:IPR014731; KEGG: sfu:Sfum_1373 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Electron transfer flavoprotein alpha subunit; SPTR: C8QXY2 Electron transfer flavoprotein alpha/beta-subunit; PFAM: 4Fe-4S binding domain; Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
 
 
 0.686
Deba_1701
COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730:IPR012255:IPR014729; KEGG: dal:Dalk_4507 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: B8FCM3 Electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein domain.
  
 
 0.657
Deba_2883
COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730:IPR012255:IPR014729; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: Q2LWQ9 Electron transfer flavoprotein beta-subunit; PFAM: Electron transfer flavoprotein domain.
  
 
 0.657
Deba_1399
COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR000523:IPR002035:IPR003593; KEGG: dau:Daud_1209 magnesium chelatase; PFAM: von Willebrand factor type A; magnesium chelatase ChlI subunit; PRIAM: Magnesium chelatase; SMART: von Willebrand factor type A; AAA ATPase; SPTR: B1I3V2 Magnesium chelatase; PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain.
 
  
 0.635
Deba_1700
COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731:IPR001308:IPR014729; KEGG: dal:Dalk_4506 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; SPTR: B8FCM2 Electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
  
 
 0.631
Deba_2884
COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterProIPR014730:IPR014731:IPR001308:IPR014729:IPR 018206; KEGG: sat:SYN_02637 electron transfer flavoprotein alpha-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; SPTR: Q2LWR0 Electron transfer flavoprotein alpha-subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
  
 
 0.631
Deba_2520
COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR002035:IPR000523; KEGG: ppd:Ppro_1261 magnesium chelatase; PFAM: von Willebrand factor type A; magnesium chelatase ChlI subunit; PRIAM: Magnesium chelatase; SMART: von Willebrand factor type A; SPTR: A1ANG2 Protoporphyrin IX magnesium-chelatase; PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain; TIGRFAM: cobaltochelatase subunit.
 
  
 0.612
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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