STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_22164Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017896:IPR017900:IPR001450; KEGG: dol:Dole_2548 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A8ZWM1 4Fe-4S ferredoxin iron-sulfur binding domain protein. (289 aa)    
Predicted Functional Partners:
Deba_2217
Molybdopterin oxidoreductase; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR009010:IPR000169:IPR006656:IPR006657; KEGG: dal:Dalk_1268 molybdopterin oxidoreductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; SPTR: B8F9M5 Molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.990
Deba_2218
InterPro IPR011031; KEGG: dol:Dole_2546 hypothetical protein; SPTR: A8ZWL9 Putative uncharacterized protein; PFAM: Class III cytochrome C family.
 
 
 0.981
Deba_2215
COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: drt:Dret_0273 molybdopterin oxidoreductase, transmembrane subunit, putative; PFAM: Polysulphide reductase NrfD; SPTR: C8WZV0 Molybdopterin oxidoreductase, transmembrane subunit; PFAM: Polysulphide reductase, NrfD.
 
 
 0.970
Deba_0568
COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: dol:Dole_0454 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: A8ZTK0 Polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD.
 
 
 0.892
Deba_2842
Molybdopterin oxidoreductase; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterProIPR006963:IPR006656:IPR006657:IPR009010:IPR 006655; KEGG: dvl:Dvul_2794 molybdopterin oxidoreductase; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; SPTR: Q1NQN8 Formate dehydrogenase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.849
Deba_2020
Conserved hypothetical protein; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterProIPR019546:IPR001450:IPR017909:IPR017896:IPR 006311; KEGG: dal:Dalk_1084 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8F941 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.762
Deba_0918
Molybdopterin oxidoreductase; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR009010:IPR006963:IPR006656:IPR006657; KEGG: dal:Dalk_0693 molydopterin dinucleotide-binding region; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; SPTR: B8FJX0 Molydopterin dinucleotide-binding region; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.751
Deba_0390
Molybdopterin dinucleotide-binding region; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963:IPR006656:IPR006657:IPR009010; KEGG: dol:Dole_1621 nitrate reductase; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; SPTR: A9A025 Nitrate reductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.749
Deba_2214
KEGG: dal:Dalk_1271 hypothetical protein; SPTR: B8F9M8 Putative uncharacterized protein.
       0.638
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.629
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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