STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2223KEGG: dal:Dalk_2308 cache, type 2 domain protein; SPTR: B8FIL1 Cache, type 2 domain protein. (165 aa)    
Predicted Functional Partners:
Deba_3248
Putative cache sensor protein; InterPro IPR013163; KEGG: dal:Dalk_1114 cache, type 2 domain protein; PFAM: Cache type 2 domain protein; SPTR: B8F971 Cache, type 2 domain protein; PFAM: Cache domain.
  
  
 
0.921
Deba_0136
KEGG: dal:Dalk_2308 cache, type 2 domain protein; SPTR: B8FIL1 Cache, type 2 domain protein.
  
  
 
0.905
Deba_2220
KEGG: dal:Dalk_4351 hypothetical protein; SPTR: B8FN61 Putative uncharacterized protein.
       0.535
Deba_2221
InterPro IPR011051:IPR013096; KEGG: dal:Dalk_3657 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: B8FGW5 Cupin 2 conserved barrel domain protein; PFAM: Cupin domain.
       0.535
Deba_2222
KEGG: fre:Franean1_5789 hypothetical protein; SPTR: A8L8L9 Putative uncharacterized protein; PFAM: RNA cap guanine-N2 methyltransferase.
       0.535
Deba_1372
COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017:IPR017900; KEGG: dol:Dole_0770 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A8ZVB9 Putative uncharacterized protein; PFAM: Cysteine-rich domain.
  
     0.494
Deba_2128
Hypothetical protein; KEGG: gur:Gura_3066 cache type 2 domain-containing protein; SPTR: A5G619 Cache, type 2 domain protein.
  
     0.485
Deba_2990
Hypothetical protein; KEGG: gur:Gura_3066 cache type 2 domain-containing protein; SPTR: A5G619 Cache, type 2 domain protein.
  
     0.422
Deba_2126
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: psa:PST_1581 restriction endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Q1NP98 HNH endonuclease; PFAM: HNH endonuclease.
  
     0.405
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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