STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Deba_2226FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR009051:IPR000759:IPR016040:IPR017896:IPR 017900:IPR001450:IPR013027:IPR003953; KEGG: dal:Dalk_3266 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: B8FJ29 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Pyridine nucle [...] (1477 aa)    
Predicted Functional Partners:
Deba_1152
COGs: COG0069 Glutamate synthase domain 2; InterProIPR002489:IPR000583:IPR006982:IPR002932:IPR 013785:IPR017932; KEGG: ttr:Tter_0474 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: D1CEN9 Glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
 
 
 0.999
Deba_2131
COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit; InterPro IPR003813; KEGG: sfu:Sfum_2154 methyl-viologen-reducing hydrogenase, delta subunit; PFAM: methyl-viologen-reducing hydrogenase delta subunit; SPTR: A0LK84 Methyl-viologen-reducing hydrogenase, delta subunit; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit.
 0.988
Deba_2133
COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit; InterPro IPR003813; KEGG: dal:Dalk_3063 methyl-viologen-reducing hydrogenase delta subunit; PFAM: methyl-viologen-reducing hydrogenase delta subunit; SPTR: B8FBK0 Methyl-viologen-reducing hydrogenase delta subunit; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit.
 0.988
Deba_2151
COGs: COG1908 Coenzyme F420-reducing hydrogenase delta subunit; InterPro IPR003813; KEGG: mta:Moth_1193 methyl-viologen-reducing hydrogenase, delta subunit; PFAM: methyl-viologen-reducing hydrogenase delta subunit; SPTR: Q2RJ82 Methyl-viologen-reducing hydrogenase, delta subunit; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit.
 0.988
Deba_0986
COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: dae:Dtox_3573 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: C8VVZ8 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich domain.
 
 0.980
Deba_0787
Methyl-viologen-reducing hydrogenase delta subunit; COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterPro IPR017896:IPR001450:IPR003813; KEGG: dal:Dalk_2269 methyl-viologen-reducing hydrogenase delta subunit; PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FIH2 Methyl-viologen-reducing hydrogenase delta subunit; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit.
 
0.973
Deba_0985
COGs: COG1150 Heterodisulfide reductase subunit C; InterPro IPR009051:IPR017900:IPR012285:IPR017896; KEGG: drm:Dred_0633 putative heterodisulfide reductase, C subunit; SPTR: A7BT24 Heterodisulfide reductase subunit C.
 
 0.973
Deba_0785
NADH dehydrogenase (quinone); COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR017896:IPR012335:IPR012336:IPR011538:IPR 019554:IPR019575:IPR001450:IPR017900:IPR019825:IPR001949; KEGG: dal:Dalk_2271 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: NADH dehydrogenase (quinone); SPTR: B8FIH4 NADH dehydrogenase (Quinone); PFAM: NADH-ubiquinone oxidoredu [...]
  
 
 0.958
Deba_2134
InterPro IPR009051:IPR017896:IPR017900; KEGG: dal:Dalk_5062 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV2 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus.
 
  
 0.956
Deba_2839
NADH dehydrogenase (quinone); COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR011538:IPR019554:IPR019575:IPR001450:IPR 012335:IPR017896:IPR012336:IPR017900:IPR001949; KEGG: dal:Dalk_5089 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: NADH dehydrogenase (quinone); SPTR: B8FDX9 NADH dehydrogenase (Quinone); PFAM: NADH-ubiquinone oxidoreductase-F ir [...]
  
 
 0.949
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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