STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Deba_22324Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR001450; KEGG: dal:Dalk_0385 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FH06 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain. (332 aa)    
Predicted Functional Partners:
Deba_2233
Anti-sigma-factor antagonist; InterPro IPR002645; KEGG: hmo:HM1_0319 anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Q1NPE5 Sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
       0.494
Deba_2231
COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: dal:Dalk_1135 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8F992 Methyl-accepting chemotaxis sensory transducer; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain.
       0.465
Deba_0261
COGs: COG0778 Nitroreductase; InterPro IPR001450:IPR000415:IPR017896:IPR017900; KEGG: dol:Dole_1688 nitroreductase; PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A9A0J2 Nitroreductase; PFAM: Nitroreductase family.
 
   
 0.464
Deba_1190
InterPro IPR000835:IPR011991; KEGG: ppd:Ppro_1939 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: A1AQC8 Transcriptional regulator, MarR family; PFAM: MarR family.
  
     0.457
Deba_3153
KEGG: dol:Dole_0758 hypothetical protein; SPTR: A8ZVA7 Putative uncharacterized protein.
  
     0.453
Deba_3227
COGs: COG0778 Nitroreductase; InterPro IPR000415:IPR001450:IPR017896:IPR017900; KEGG: dma:DMR_23050 nitroreductase family protein; PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C4XSV4 Nitroreductase family protein; PFAM: Nitroreductase family; 4Fe-4S binding domain.
 
     0.444
Deba_3208
KEGG: dal:Dalk_2965 protein of unknown function DUF169; SPTR: B8FL20 Putative uncharacterized protein; PFAM: Uncharacterised ArCR, COG2043.
  
     0.440
Deba_2846
COGs: COG1882 Pyruvate-formate lyase; InterPro IPR004184; KEGG: dal:Dalk_4867 formate C-acetyltransferase; PFAM: pyruvate formate-lyase PFL; PRIAM: Formate C-acetyltransferase; SPTR: B8FDB2 Formate C-acetyltransferase; PFAM: Pyruvate formate lyase.
  
   
 0.418
Deba_0653
Protein of unknown function DUF401; COGs: COG1906 conserved hypothetical protein; InterPro IPR007294; KEGG: dol:Dole_1082 hypothetical protein; PFAM: protein of unknown function DUF401; SPTR: A8ZX33 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF401); TIGRFAM: converved hypothetical integral membrane protein.
  
     0.417
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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