STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2247KEGG: tde:TDE2009 hypothetical protein; SPTR: C1SMG9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329). (218 aa)    
Predicted Functional Partners:
Deba_2249
MMPL domain protein; COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731:IPR004869; KEGG: dol:Dole_0610 exporter of the RND superfamily protein-like protein; PFAM: MMPL domain protein; SPTR: B6WQE3 Putative uncharacterized protein; PFAM: MMPL family.
 
  
 0.852
Deba_2250
KEGG: pgn:PGN_1918 hypothetical protein; SPTR: C1SMH0 Putative uncharacterized protein.
 
    0.838
Deba_2836
Patched family protein; COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR003392:IPR000731; KEGG: dal:Dalk_0753 patched family protein; PFAM: Patched family protein; SPTR: B8FHP1 Patched family protein; PFAM: Patched family; MMPL family.
 
  
 0.796
Deba_1189
COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: ppd:Ppro_1940 RND efflux transporter; SPTR: A1AQC9 Exporters of the RND superfamily; PFAM: MMPL family.
 
  
 0.793
Deba_2820
COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: hor:Hore_08450 efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family; SPTR: B8CWD3 Efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family; PFAM: MMPL family; TIGRFAM: The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
 
  
 0.791
Deba_1187
KEGG: ppd:Ppro_1942 hypothetical protein; SPTR: A1AQD1 Putative uncharacterized protein.
 
    0.756
Deba_2822
KEGG: fsu:Fisuc_0005 hypothetical protein; SPTR: C9RIX6 Putative uncharacterized protein.
 
     0.732
Deba_2834
KEGG: dol:Dole_2689 SH3 type 3 domain-containing protein; SPTR: A8ZXB3 SH3 type 3 domain protein; PFAM: Protein of unknown function (DUF1302).
 
     0.654
Deba_2248
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q311J9 Receptor-mostly Fe transport; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
   
 0.624
Deba_1302
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: drt:Dret_0142 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: C8WZG9 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes.
   
 
 0.577
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.