STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2252COGs: COG3551 conserved hypothetical protein; KEGG: swi:Swit_4000 hypothetical protein; SPTR: A8TT37 Glycosyl transferase, group 2 family protein; manually curated. (292 aa)    
Predicted Functional Partners:
Deba_2251
Hypothetical protein; KEGG: gdj:Gdia_1815 glycosyl transferase family 2; SPTR: A9HGV1 Putative glycosyl transferase.
 
    0.612
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
 
    0.494
Deba_1006
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein; PFAM: glycosyl transferase family 2; SPTR: Q748H9 Glycosyl transferase, group 1/2 family protein; PFAM: Glycosyl transferase family 2.
     0.412
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.