STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2262Hypothetical protein; KEGG: similar to epsin 2a; K12471 epsin; SPTR: B7X1T9 Gp37Gp68 family protein. (105 aa)    
Predicted Functional Partners:
Deba_2263
KEGG: hypothetical protein; SPTR: A9SND1 Predicted protein.
       0.498
Deba_2261
Putative PAS/PAC sensor protein; InterPro IPR009082:IPR000014:IPR000700:IPR013656; KEGG: dal:Dalk_2075 PAS/PAC sensor hybrid histidine kinase; PFAM: PAS fold-4 domain protein; SPTR: B8FG89 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
       0.448
Deba_2264
COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR013785:IPR004136; KEGG: dol:Dole_1182 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase NPD; SPTR: A8ZXN0 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase.
       0.448
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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