STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2268Permease; COGs: COG0701 permease; InterPro IPR005524; KEGG: dat:HRM2_48210 putative permease; PFAM: permease; SPTR: C0QIC5 Putative permease; PFAM: Predicted permease. (395 aa)    
Predicted Functional Partners:
Deba_2267
Conserved hypothetical protein; InterPro IPR012336:IPR012335; KEGG: sfu:Sfum_3389 hypothetical protein; SPTR: A0LNR0 Putative uncharacterized protein.
 
  
 0.953
Deba_2266
Redox-active disulfide protein 2; InterPro IPR012336:IPR012335:IPR005243; KEGG: dol:Dole_2878 redox-active disulfide protein 2; SPTR: A8ZYF6 Redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2; TIGRFAM: small redox-active disulfide protein 2.
 
  
 0.952
Deba_2269
Transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: ank:AnaeK_4017 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Q1K378 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family.
 
  
 0.848
Deba_2271
Permease; COGs: COG0701 permease; InterPro IPR005524; KEGG: dal:Dalk_3678 permease; PFAM: permease; SPTR: B8FLL2 Permease; PFAM: Predicted permease.
 
    
0.629
Deba_2270
Transcriptional regulator, ArsR family; COGs: COG0640 transcriptional regulator protein; InterPro IPR001845:IPR011991; KEGG: dal:Dalk_3679 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: B8FLL3 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family.
  
  
 0.605
Deba_2454
Conserved hypothetical protein; InterPro IPR020053; KEGG: dma:DMR_12920 hypothetical membrane protein; SPTR: C4XMJ2 Hypothetical membrane protein; manually curated.
  
  
 0.486
trmB
Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.478
Deba_0054
DGC domain protein; COGs: COG4273 conserved hypothetical protein; InterPro IPR014958; KEGG: sfu:Sfum_3599 hypothetical protein; PFAM: DGC domain protein; SPTR: A0LPB7 Putative uncharacterized protein; manually curated; PFAM: DGC domain.
 
  
 0.461
Deba_2537
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
    0.408
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.