STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2275Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: tye:THEYE_A1314 AstB/ChuR-related protein; PFAM: Radical SAM domain protein; SPTR: B5YFS6 AstB/chuR-related protein; PFAM: Radical SAM superfamily. (396 aa)    
Predicted Functional Partners:
Deba_2274
Domain of unknown function DUF1791; COGs: COG1416 conserved hypothetical protein; InterPro IPR014865; KEGG: pis:Pisl_0130 hypothetical protein; PFAM: Domain of unknown function DUF1791; SPTR: A1RQT1 Putative uncharacterized protein; PFAM: DsrE/DsrF-like family.
       0.773
Deba_2276
KEGG: tye:THEYE_A1819 hypothetical protein; SPTR: B5YHM4 Putative uncharacterized protein.
       0.773
Deba_2506
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: mex:Mext_2406 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C7IBZ9 Radical SAM domain protein; PFAM: Radical SAM superfamily.
  
     0.747
Deba_2273
Hypothetical protein; InterPro IPR011051; KEGG: tye:THEYE_A0935 hypothetical protein; SPTR: B5YKK6 Putative uncharacterized protein; PFAM: Cupin domain.
       0.709
Deba_2507
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: mpo:Mpop_2365 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C7IBZ9 Radical SAM domain protein; PFAM: Radical SAM superfamily.
  
     0.706
Deba_0578
Putative transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterPro IPR011991; KEGG: dal:Dalk_4278 putative transcriptional regulator, AsnC family; SPTR: B8FMC0 Putative transcriptional regulator, AsnC family.
 
  
 0.653
Deba_0788
Putative transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR000485:IPR011991:IPR011008; KEGG: dal:Dalk_4142 putative transcriptional regulator, AsnC family; SMART: Transcription regulator, AsnC-type; SPTR: B8FMV6 Putative transcriptional regulator, AsnC family; PFAM: AsnC family.
 
  
 0.643
Deba_2272
Hypothetical protein; InterPro IPR001589; KEGG: bcm:Bcenmc03_6922 hypothetical protein; SPTR: C9YBS0 Putative uncharacterized protein.
       0.497
Deba_0689
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.449
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.