STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2292TPR repeat-containing protein; InterPro IPR011990:IPR019734:IPR013026:IPR001440; KEGG: pca:Pcar_0844 hypothetical protein; PFAM: TPR repeat-containing protein; SPTR: Q3A6A7 Putative uncharacterized protein. (404 aa)    
Predicted Functional Partners:
Deba_2297
KEGG: pca:Pcar_0849 hypothetical protein; SPTR: Q3A6A2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3450).
 
   
 0.935
Deba_2296
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR017270:IPR002898; KEGG: pca:Pcar_0848 TolR-like transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q3A6A3 TolR-like transport protein; PFAM: Protein of unknown function (DUF3450); MotA/TolQ/ExbB proton channel family.
 
    0.932
Deba_2295
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: pca:Pcar_0847 biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q3A6A4 Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
    0.898
Deba_2293
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
    0.876
Deba_2294
COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: dal:Dalk_3527 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: B8FC10 Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
     0.869
Deba_0826
KEGG: dol:Dole_1197 hypothetical protein; SPTR: A8ZXP5 Putative uncharacterized protein.
  
   
 0.674
Deba_1635
COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dat:HRM2_47540 outer membrane receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C0QHE4 Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
  
    0.649
Deba_2369
InterPro IPR012480; KEGG: app:CAP2UW1_0857 heparinase II/III family protein; PFAM: Heparinase II/III family protein; SPTR: C7RNQ9 Heparinase II/III family protein; PFAM: Heparinase II/III-like protein.
  
     0.624
Deba_0588
TPR repeat-containing protein; InterPro IPR001440:IPR019734:IPR011990:IPR013026; KEGG: rca:Rcas_0215 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: A7NFW7 Tetratricopeptide TPR_2 repeat protein.
 
   
 0.617
Deba_0680
KEGG: dat:HRM2_47730 hypothetical protein; SPTR: C0QHG3 Putative uncharacterized protein.
  
     0.604
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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