STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2295MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: pca:Pcar_0847 biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q3A6A4 Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family. (202 aa)    
Predicted Functional Partners:
Deba_2294
COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: dal:Dalk_3527 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: B8FC10 Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.993
Deba_2293
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.983
Deba_2432
COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: ppd:Ppro_1238 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: A1AND9 Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; TIGRFAM: TolR protein.
 
 
 0.954
Deba_2297
KEGG: pca:Pcar_0849 hypothetical protein; SPTR: Q3A6A2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3450).
 
  
 0.935
Deba_2292
TPR repeat-containing protein; InterPro IPR011990:IPR019734:IPR013026:IPR001440; KEGG: pca:Pcar_0844 hypothetical protein; PFAM: TPR repeat-containing protein; SPTR: Q3A6A7 Putative uncharacterized protein.
 
    0.898
Deba_2296
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR017270:IPR002898; KEGG: pca:Pcar_0848 TolR-like transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q3A6A3 TolR-like transport protein; PFAM: Protein of unknown function (DUF3450); MotA/TolQ/ExbB proton channel family.
 
    
0.835
Deba_2431
TonB family protein; InterPro IPR006260; KEGG: dvm:DvMF_2362 protein TolA; SPTR: Q726K6 TonB protein, putative; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TolA protein; TonB family C-terminal domain.
  
 
 0.818
Deba_2433
Protein TolQ; COGs: COG0811 Biopolymer transport protein; InterPro IPR014163:IPR002898; KEGG: gur:Gura_0206 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: A5GDC3 MotA/TolQ/ExbB proton channel; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: TolQ protein.
  
     0.598
Deba_1198
TonB-dependent receptor plug; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531:IPR018181; KEGG: dat:HRM2_08940 TonB-dependent outer-membrane uptake protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: C0QKD6 TonB-dependent outer-membrane uptake protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
  
 0.558
Deba_2831
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR018522; KEGG: amr:AM1_A0170 TonB-dependent receptor, putative; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A8ZKH7 TonB-dependent receptor, putative; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.
 
  
 0.545
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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