STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2309OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: nmu:Nmul_A1315 flagellar motor protein MotD; PFAM: OmpA/MotB domain protein; SPTR: Q2Y9F3 OmpA/MotB; PFAM: OmpA family. (260 aa)    
Predicted Functional Partners:
Deba_2308
MotA/TolQ/ExbB proton channel; COGs: COG1291 Flagellar motor component; InterPro IPR002898; KEGG: dsa:Desal_3811 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q1JZT0 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family.
 
 0.995
Deba_1237
MotA/TolQ/ExbB proton channel; COGs: COG1291 Flagellar motor component; InterPro IPR002898:IPR000540; KEGG: dma:DMR_12670 chemotaxis protein MotA; PFAM: MotA/TolQ/ExbB proton channel; SPTR: C0GN88 MotA/TolQ/ExbB proton channel; manually curated; PFAM: MotA/TolQ/ExbB proton channel family.
 
 0.986
Deba_0347
MotA/TolQ/ExbB proton channel; COGs: COG1291 Flagellar motor component; InterPro IPR002898:IPR000540; KEGG: amt:Amet_2714 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: A6TRP8 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family.
 
 0.985
Deba_1619
MotA/TolQ/ExbB proton channel; COGs: COG1291 Flagellar motor component; InterPro IPR002898:IPR000540; KEGG: dvl:Dvul_2319 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q72ED8 Chemotaxis protein PomA; PFAM: MotA/TolQ/ExbB proton channel family.
 
 0.985
Deba_2311
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
 
 0.931
Deba_2312
COGs: COG1868 Flagellar motor switch protein; InterPro IPR001543:IPR001689; KEGG: dma:DMR_22580 flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; SPTR: C4XSQ7 Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.
  
  
 0.877
Deba_1230
CheW protein; COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR008207:IPR002545; KEGG: dba:Dbac_0868 CheA signal transduction histidine kinase; PFAM: CheW domain protein; Hpt domain protein; SMART: CheW domain protein; Hpt domain protein; SPTR: C7LPE3 CheA signal transduction histidine kinase; PFAM: CheW-like domain; Hpt domain.
  
  
 0.876
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
  
 0.872
Deba_2313
COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR001543:IPR001172:IPR012826; KEGG: dat:HRM2_37180 FliN; PFAM: surface presentation of antigens (SPOA) protein; SPTR: C0QAJ3 FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN.
 
  
 0.866
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
 
  
 0.864
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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