STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2346COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mag:amb0148 hypothetical protein; PFAM: glycosyl transferase group 1; SPTR: B4D5P9 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1. (588 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.966
Deba_2343
KEGG: dma:DMR_23530 hypothetical protein; SPTR: C4XT02 Putative uncharacterized protein.
 
    0.953
Deba_0502
4-alpha-glucanotransferase; COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterProIPR004300:IPR015178:IPR015179:IPR011330:IPR 011013:IPR000602; KEGG: rba:RB2160 alpha-amylase; PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1925; Domain of unknown function DUF1926; PRIAM: 4-alpha-glucanotransferase; SPTR: Q7UWA6 Alpha-amylase; PFAM: Domain of unknown function (DUF1925); Glycosyl hydrolase family 57; Domain of unknown function (DUF1926).
 
 
  0.918
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
     
 0.903
glgA-2
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
     
 0.903
Deba_2344
Protein of unknown function DUF115; COGs: COG2604 conserved hypothetical protein; InterPro IPR002826; KEGG: mta:Moth_0762 hypothetical protein; PFAM: protein of unknown function DUF115; SPTR: Q2RKF9 Putative uncharacterized protein; PFAM: Protein of unknown function DUF115.
 
    0.867
Deba_2347
COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: gsu:GSU3025 heptosyltransferase family protein; PFAM: glycosyl transferase family 9; SPTR: Q748H7 Heptosyltransferase family protein; PFAM: Glycosyltransferase family 9 (heptosyltransferase).
 
  
 0.830
Deba_2773
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040:IPR008089; KEGG: rba:RB9168 nucleotide sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Q7ULZ7 Nucleotide sugar epimerase; PFAM: NAD dependent epimerase/dehydratase family.
  
 
 0.827
Deba_2348
KEGG: dde:Dde_0564 hypothetical protein; SPTR: Q315N1 Putative uncharacterized protein.
 
     0.823
glgC
Nucleotidyl transferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
    
 0.818
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.