STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2368KEGG: tgr:Tgr7_0065 hypothetical protein; SPTR: C0GRH8 Putative uncharacterized protein. (100 aa)    
Predicted Functional Partners:
Deba_2367
Hypothetical protein; KEGG: pto:PTO0496 isopentenyl pyrophosphate isomerase; SPTR: Q1NYE9 Putative uncharacterized protein.
       0.781
Deba_1761
InterPro IPR007272; KEGG: mgm:Mmc1_1601 protein of unknown function DUF395, YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: C0GRH3 Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395).
 
     0.771
Deba_2366
Hypothetical protein; SPTR: Q1NYE8 Putative uncharacterized protein.
       0.771
Deba_2369
InterPro IPR012480; KEGG: app:CAP2UW1_0857 heparinase II/III family protein; PFAM: Heparinase II/III family protein; SPTR: C7RNQ9 Heparinase II/III family protein; PFAM: Heparinase II/III-like protein.
 
     0.709
Deba_2115
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG1150 Heterodisulfide reductase subunit C; InterProIPR009051:IPR012285:IPR017896:IPR017900:IPR 006655; KEGG: dal:Dalk_5066 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV6 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Nitrate reductase gamma subunit.
 
   
 0.704
Deba_1879
Fibronectin type III domain protein; InterPro IPR003961:IPR008957; KEGG: sus:Acid_1064 fibronectin, type III domain-containing protein; PFAM: Fibronectin type III domain protein; SPTR: Q02A64 Fibronectin, type III domain protein; PFAM: Fibronectin type III domain.
  
     0.643
Deba_0780
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG1150 Heterodisulfide reductase subunit C; InterProIPR009056:IPR017896:IPR012285:IPR009051:IPR 017900; KEGG: dal:Dalk_5066 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV6 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Nitrate reductase gamma subunit.
 
   
 0.626
Deba_1535
Protein of unknown function DUF35; COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: tvo:TVN1259 nucleic-acid-binding protein; PFAM: protein of unknown function DUF35; SPTR: Q978Y2 Putative uncharacterized protein TVG1322512.
  
     0.622
Deba_2892
Peptidase M48 Ste24p; COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterProIPR001915:IPR001440:IPR019734:IPR011990:IPR 013026; KEGG: dps:DP0525 hypothetical protein; PFAM: peptidase M48 Ste24p; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: C8R0Y9 Peptidase M48 Ste24p; PFAM: Peptidase family M48.
  
     0.606
Deba_1757
Hypothetical protein; InterPro IPR011031; KEGG: sse:Ssed_4024 hypothetical protein; SPTR: A8G0K5 Putative uncharacterized protein.
  
     0.530
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.