STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2410Peptidoglycan-binding lysin domain protein; InterPro IPR002482:IPR018392; KEGG: rmr:Rmar_0215 lytic transglycosylase catalytic; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: A3HWY5 Putative membrane-bound lytic murein transglycosylase; PFAM: LysM domain. (221 aa)    
Predicted Functional Partners:
Deba_2411
COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932:IPR014045; KEGG: scl:sce3096 phosphoprotein phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; SPTR: A9GIE5 Phosphoprotein phosphatase; PFAM: Protein phosphatase 2C.
       0.636
Deba_2409
HhH-GPD family protein; COGs: COG2231 Uncharacterized protein related to Endonuclease III; InterPro IPR011257:IPR003265; KEGG: glo:Glov_0376 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; SPTR: Q1NLA0 Helix-hairpin-helix motif:HhH-GPD; PFAM: HhH-GPD superfamily base excision DNA repair protein.
       0.561
Deba_2068
KEGG: dsa:Desal_1340 hypothetical protein; SPTR: C6C206 Putative uncharacterized protein; manually curated.
   
 
 0.518
Deba_3268
Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: scl:sce0105 hypothetical protein; PFAM: pentapeptide repeat protein; SPTR: A9GLE4 Putative uncharacterized protein; PFAM: Pentapeptide repeats (8 copies).
   
 
 0.518
Deba_2412
Protein of unknown function DUF2142, membrane; COGs: COG4713 membrane protein; InterPro IPR018674; KEGG: cja:CJA_3453 hypothetical protein; PFAM: Protein of unknown function DUF2142, membrane; SPTR: B3PFZ9 Putative membrane protein; PFAM: Predicted membrane protein (DUF2142).
       0.478
Deba_0361
InterPro IPR011467; KEGG: dal:Dalk_3698 protein of unknown function DUF1573; PFAM: protein of unknown function DUF1573; SPTR: B8FLN2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1573).
  
     0.468
Deba_2435
Lytic transglycosylase catalytic; InterPro IPR002482:IPR008258:IPR018392; KEGG: sfu:Sfum_0750 peptidoglycan-binding LysM; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: A0LG96 Peptidoglycan-binding LysM; PFAM: Transglycosylase SLT domain; LysM domain.
 
  
 0.413
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
       0.408
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.