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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2417KEGG: tgr:Tgr7_2445 hypothetical protein; SPTR: B8GLG8 Putative uncharacterized protein. (297 aa)    
Predicted Functional Partners:
Deba_2416
Sporulation domain protein; InterPro IPR007730:IPR011990:IPR013026; KEGG: mag:amb0222 TPR repeat-containing SEL1 subfamily protein; PFAM: Sporulation domain protein; SPTR: Q2WAU9 TPR repeat SEL1 subfamily; PFAM: Sporulation related domain.
       0.565
Deba_2418
Protein of unknown function DUF77; COGs: COG0011 conserved hypothetical protein; InterPro IPR002767:IPR016198; KEGG: mta:Moth_2497 hypothetical protein; PFAM: protein of unknown function DUF77; SPTR: Q2RFL0 Putative uncharacterized protein; PFAM: Domain of unknown function DUF77; TIGRFAM: conserved hypothetical protein TIGR00106.
       0.542
Deba_2419
Peptidase M48 Ste24p; COGs: COG4784 Putative Zn-dependent protease; InterPro IPR011990:IPR001915:IPR019734:IPR013026; KEGG: dba:Dbac_3171 peptidase M48 Ste24p; PFAM: peptidase M48 Ste24p; SPTR: C0GPE5 Peptidase M48 Ste24p; PFAM: Peptidase family M48.
  
    0.496
pheT
COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR004532:IPR002547:IPR005121:IPR012340:IPR 020825:IPR005147:IPR016027:IPR009061:IPR005146; KEGG: sfu:Sfum_0429 phenylalanyl-tRNA synthetase, beta subunit; PFAM: B3/4 domain protein; t-RNA-binding domain protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; SPTR: A0LFC7 Phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synth [...]
  
    0.418
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.