STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2424PhoH family protein; COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR006596:IPR003714; KEGG: dal:Dalk_3397 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; SPTR: B8FLD9 PhoH family protein; PFAM: PhoH-like protein. (455 aa)    
Predicted Functional Partners:
Deba_1946
Ribonuclease, Rne/Rng family; COGs: COG1530 Ribonuclease G and E; InterPro IPR019307:IPR016027:IPR012340:IPR004659; KEGG: sfu:Sfum_1609 ribonuclease; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; SPTR: A0LIP4 RNAse G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family.
  
    0.555
Deba_2425
KEGG: cyh:Cyan8802_2662 hypothetical protein; SPTR: C7QQC9 Putative uncharacterized protein.
       0.512
Deba_2478
ABC transporter related protein; COGs: COG1101 ABC-type uncharacterized transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: sfu:Sfum_1504 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A0LIE1 ABC transporter related; PFAM: ABC transporter.
  
    0.483
Deba_2426
KEGG: mgm:Mmc1_0764 hypothetical protein; SPTR: A3ISX8 Putative uncharacterized protein.
       0.475
Deba_2427
Carbamoyltransferase; COGs: COG2192 carbamoyl transferase NodU family; InterPro IPR003696; KEGG: cyp:PCC8801_3456 carbamoyltransferase; PFAM: Carbamoyltransferase; SPTR: B7K0E0 Carbamoyltransferase; PFAM: Carbamoyltransferase.
       0.475
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.459
Deba_0980
Ribonuclease, Rne/Rng family; COGs: COG1530 Ribonuclease G and E; InterProIPR016027:IPR003029:IPR019307:IPR012340:IPR 004659; KEGG: gme:Gmet_2546 ribonuclease E; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; SPTR: Q39SK9 Ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family.
  
    0.458
Deba_1083
InterPro IPR000620; KEGG: gur:Gura_2208 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: A5G3M5 Putative uncharacterized protein; PFAM: EamA-like transporter family.
   
    0.437
Deba_1055
COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR005170; KEGG: gme:Gmet_2368 CBS:transporter-associated region; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; SPTR: Q39T31 CBS:Transporter-associated region; PFAM: CBS domain; Transporter associated domain.
   
    0.424
Deba_2479
Protein of unknown function DUF534; COGs: COG4120 ABC-type uncharacterized transport system permease component; InterPro IPR001851:IPR007487; KEGG: sfu:Sfum_1505 hypothetical protein; PFAM: protein of unknown function DUF534; inner-membrane translocator; SPTR: A0LIE2 Putative uncharacterized protein; PFAM: ABC transporter substrate binding protein; Branched-chain amino acid transport system / permease component.
   
    0.412
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.