STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2425KEGG: cyh:Cyan8802_2662 hypothetical protein; SPTR: C7QQC9 Putative uncharacterized protein. (52 aa)    
Predicted Functional Partners:
Deba_2426
KEGG: mgm:Mmc1_0764 hypothetical protein; SPTR: A3ISX8 Putative uncharacterized protein.
 
     0.938
Deba_2427
Carbamoyltransferase; COGs: COG2192 carbamoyl transferase NodU family; InterPro IPR003696; KEGG: cyp:PCC8801_3456 carbamoyltransferase; PFAM: Carbamoyltransferase; SPTR: B7K0E0 Carbamoyltransferase; PFAM: Carbamoyltransferase.
 
     0.938
Deba_2424
PhoH family protein; COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR006596:IPR003714; KEGG: dal:Dalk_3397 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; SPTR: B8FLD9 PhoH family protein; PFAM: PhoH-like protein.
       0.512
cpoB
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
       0.478
Deba_3075
Hypothetical protein; InterPro IPR013830:IPR013831; KEGG: mgm:Mmc1_1079 GDSL family lipase; SPTR: A0L6K4 Lipolytic enzyme, G-D-S-L family.
 
     0.467
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
       0.414
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.