STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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[Homology]
Score
palPeptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (179 aa)    
Predicted Functional Partners:
cpoB
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.882
Deba_3076
WD40 domain protein beta Propeller; InterPro IPR011659:IPR011042; KEGG: fsu:Fisuc_0369 WD40 domain protein beta propeller; PFAM: WD40 domain protein beta Propeller; SPTR: C9RKQ3 WD40 domain protein beta Propeller; PFAM: WD40-like Beta Propeller Repeat.
 
 
 0.854
Deba_2108
InterPro IPR005632; KEGG: drt:Dret_2230 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: C8X517 Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like).
  
 
 0.751
Deba_2433
Protein TolQ; COGs: COG0811 Biopolymer transport protein; InterPro IPR014163:IPR002898; KEGG: gur:Gura_0206 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: A5GDC3 MotA/TolQ/ExbB proton channel; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: TolQ protein.
 
   
 0.750
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.687
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.687
Deba_0839
Surface antigen (D15); COGs: COG0729 Outer membrane protein; InterPro IPR010827:IPR000184; KEGG: sfu:Sfum_0758 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: A0LGA4 Surface antigen (D15); PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
 
 0.670
rpsU
Ribosomal protein S21; InterPro IPR018278:IPR001911; KEGG: pca:Pcar_2255 30S ribosomal protein S21; SPTR: Q1JW03 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; manually curated; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.649
Deba_2111
Lipoprotein releasing system, transmembrane protein, LolC/E family; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838:IPR011925; KEGG: sfu:Sfum_3743 LolC/E family lipoprotein releasing system, transmembrane protein; PFAM: protein of unknown function DUF214; SPTR: A0LPR1 Lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.
  
 
 
 0.643
Deba_0596
Lytic transglycosylase catalytic; InterPro IPR008258:IPR018392:IPR002482; KEGG: pca:Pcar_2042 membrane-bound lytic murein transglycosylase D precursor; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Q3A2X4 Membrane-bound lytic murein transglycosylase D; PFAM: Transglycosylase SLT domain; LysM domain.
 
 
 0.637
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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