STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2470KEGG: ppd:Ppro_1254 cytochrome c assembly protein; SPTR: A1ANF5 Cytochrome c assembly protein; PFAM: Cytochrome C assembly protein. (258 aa)    
Predicted Functional Partners:
Deba_2471
KEGG: dal:Dalk_4055 hypothetical protein; SPTR: B8FM07 Putative uncharacterized protein; PFAM: ResB-like family.
  
  
 0.928
Deba_0815
uroporphyrin-III C-methyltransferase; COGs: COG0007 Uroporphyrinogen-III methylase; InterProIPR006366:IPR014777:IPR014776:IPR000878:IPR 003754:IPR003043; KEGG: sfu:Sfum_3201 uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; SPTR: A0LN72 Uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase.
  
    0.866
Deba_2473
COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: ppd:Ppro_1257 transport system permease protein; PFAM: transport system permease protein; SPTR: A1ANF8 Transport system permease protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.804
Deba_2472
Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dal:Dalk_4056 ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein; PFAM: periplasmic binding protein; SPTR: B8FM08 ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein; PFAM: Periplasmic binding protein.
       0.793
Deba_2474
ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593:IPR020322:IPR003439; KEGG: ppd:Ppro_1258 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A1ANF9 ABC transporter related; PFAM: ABC transporter.
     
 0.791
Deba_2469
Cobaltochelatase; COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: dal:Dalk_4060 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Cobaltochelatase; SPTR: B8FM12 Cobaltochelatase; PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit.
  
    0.790
Deba_3123
COGs: COG1333 ResB protein required for cytochrome c biosynthesis; InterPro IPR007816; KEGG: dat:HRM2_18910 ResB; PFAM: ResB family protein; SPTR: C0QBY0 ResB; PFAM: ResB-like family.
  
  
 0.689
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
  
  
 0.502
Deba_0067
Redoxin domain protein; InterPro IPR013740:IPR017936:IPR012336:IPR012335; KEGG: afe:Lferr_0206 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: C6MAN3 Thioredoxin family protein; PFAM: Redoxin.
  
  
 0.483
Deba_1369
Thioredoxin domain-containing protein; InterPro IPR012335:IPR012336; KEGG: sfu:Sfum_3604 thioredoxin domain-containing protein; SPTR: A0LPC2 Thioredoxin domain; PFAM: Thioredoxin.
  
  
 0.483
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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