STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2488COGs: COG2367 Beta-lactamase class A; InterPro IPR000871:IPR012338:IPR001466:IPR017909; KEGG: bcn:Bcen_3438 beta-lactamase; PFAM: beta-lactamase; PRIAM: Beta-lactamase; SPTR: C0LP01 Beta-lactamase LUT-5; PFAM: Beta-lactamase. (298 aa)    
Predicted Functional Partners:
Deba_0128
Peptidase S45 penicillin amidase; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692:IPR014395; KEGG: dal:Dalk_4289 peptidase S45 penicillin amidase; PFAM: peptidase S45 penicillin amidase; SPTR: B8FMD1 Peptidase S45 penicillin amidase; PFAM: Penicillin amidase.
     
  0.900
Deba_2489
InterPro IPR002539; KEGG: dal:Dalk_5057 MaoC domain protein dehydratase; PFAM: MaoC domain protein dehydratase; SPTR: B8FDU7 MaoC domain protein dehydratase; PFAM: MaoC like domain.
       0.490
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.439
mtaD
Amidohydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.
  
    0.435
Deba_0376
Amidohydrolase; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680:IPR011059; KEGG: sat:SYN_01991 chlorohydrolase/deaminase family protein; PFAM: amidohydrolase; SPTR: Q2LUH4 5-methylthioadenosine/S-adenosylhomocysteine deaminase 2; PFAM: Amidohydrolase family.
  
    0.435
Deba_2196
Amidohydrolase; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: dma:DMR_02310 amidohydrolase family protein; PFAM: amidohydrolase; SPTR: C4XGE2 Amidohydrolase family protein; PFAM: Amidohydrolase family.
  
    0.435
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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