STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2491KEGG: rhi:NGR_a00960 conserved hypothetical 59.0 kDa protein; SPTR: P55687 Uncharacterized protein y4wI. (499 aa)    
Predicted Functional Partners:
Deba_2492
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR006158; KEGG: ana:all2023 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q8YVF5 All2023 protein; PFAM: Radical SAM superfamily; B12 binding domain.
       0.631
Deba_2493
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR006158:IPR007197; KEGG: rlt:Rleg2_4968 radical SAM domain protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: B6A0R0 Radical SAM domain protein; PFAM: Radical SAM superfamily; B12 binding domain.
       0.631
Deba_2494
KEGG: rhi:NGR_a00960 conserved hypothetical 59.0 kDa protein; SPTR: P55687 Uncharacterized protein y4wI.
      
0.631
Deba_2495
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: rlt:Rleg2_4968 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: B6A0R0 Radical SAM domain protein; PFAM: Radical SAM superfamily.
       0.631
Deba_2496
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: ana:all2023 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q08PP1 Radical SAM; PFAM: Radical SAM superfamily.
       0.631
Deba_2490
InterPro IPR012903; KEGG: rlt:Rleg2_4966 hypothetical protein; PFAM: protein of unknown function nitrogen fixation; SPTR: Q05QL5 Possible SAP domain; PFAM: Nitrogen fixation protein of unknown function.
       0.486
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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