STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2509Radical SAM domain protein; COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: paa:Paes_2284 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: B3JFX5 Putative uncharacterized protein. (495 aa)    
Predicted Functional Partners:
Deba_2508
ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR003593:IPR011527:IPR001140:IPR 003439:IPR017940; KEGG: nha:Nham_3544 ABC transporter, ATP-binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: Q0FX25 ABC multidrug efflux transporter, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter.
       0.781
Deba_2507
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: mpo:Mpop_2365 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C7IBZ9 Radical SAM domain protein; PFAM: Radical SAM superfamily.
     
 0.770
Deba_2510
Radical SAM domain protein; COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: pmf:P9303_04221 putative arylsulfatase regulatory protein; PFAM: Radical SAM domain protein; SPTR: B5ILU5 Arylsulfatase regulatory protein; PFAM: Radical SAM superfamily.
 
     0.765
Deba_2506
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: mex:Mext_2406 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C7IBZ9 Radical SAM domain protein; PFAM: Radical SAM superfamily.
     
 0.746
Deba_2511
Hypothetical protein; InterPro IPR004232; KEGG: plt:Plut_0881 hypothetical protein; SPTR: Q3B4I6 Putative uncharacterized protein; PFAM: Nitrile hydratase, alpha chain.
       0.551
Deba_2505
Hypothetical protein.
       0.458
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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