STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2518Radical SAM domain protein; COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR000385:IPR007197; KEGG: ppd:Ppro_1270 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SPTR: A1ANH1 Radical SAM domain protein; PFAM: Radical SAM superfamily. (337 aa)    
Predicted Functional Partners:
Deba_2520
COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR002035:IPR000523; KEGG: ppd:Ppro_1261 magnesium chelatase; PFAM: von Willebrand factor type A; magnesium chelatase ChlI subunit; PRIAM: Magnesium chelatase; SMART: von Willebrand factor type A; SPTR: A1ANG2 Protoporphyrin IX magnesium-chelatase; PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain; TIGRFAM: cobaltochelatase subunit.
 
     0.820
Deba_2517
Cobaltochelatase; COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003006:IPR003672; KEGG: ppd:Ppro_1259 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Cobaltochelatase; SPTR: A1ANG0 Hydrogenobyrinic acid a,c-diamide cobaltochelatase; PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit.
       0.789
Deba_2519
COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR003593:IPR000523; KEGG: cli:Clim_1021 magnesium chelatase; PFAM: magnesium chelatase ChlI subunit; PRIAM: Magnesium chelatase; SMART: AAA ATPase; SPTR: B3EC21 Magnesium chelatase; PFAM: Magnesium chelatase, subunit ChlI.
       0.781
Deba_2521
COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: paa:Paes_1294 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: B4S8D2 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase.
       0.775
Deba_2506
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: mex:Mext_2406 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C7IBZ9 Radical SAM domain protein; PFAM: Radical SAM superfamily.
 
   
 0.691
Deba_2507
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: mpo:Mpop_2365 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C7IBZ9 Radical SAM domain protein; PFAM: Radical SAM superfamily.
 
   
 0.637
Deba_2516
Magnesium chelatase; COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: cts:Ctha_2441 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: B3QX80 Cobaltochelatase; PFAM: CobN/Magnesium Chelatase.
       0.624
Deba_0578
Putative transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterPro IPR011991; KEGG: dal:Dalk_4278 putative transcriptional regulator, AsnC family; SPTR: B8FMC0 Putative transcriptional regulator, AsnC family.
  
     0.510
Deba_0788
Putative transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR000485:IPR011991:IPR011008; KEGG: dal:Dalk_4142 putative transcriptional regulator, AsnC family; SMART: Transcription regulator, AsnC-type; SPTR: B8FMV6 Putative transcriptional regulator, AsnC family; PFAM: AsnC family.
  
     0.490
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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