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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2524TonB-dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_4063 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8FM15 TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (707 aa)    
Predicted Functional Partners:
Deba_2526
Pyrrolo-quinoline quinone; InterPro IPR015943:IPR011047:IPR002372; KEGG: dal:Dalk_4066 hypothetical protein; PFAM: Pyrrolo-quinoline quinone; SPTR: B8FM18 Putative uncharacterized protein; PFAM: PQQ enzyme repeat.
 
   
 0.854
Deba_2293
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.816
Deba_2467
TonB-dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_4061 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8FM13 TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
     0.773
Deba_1121
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0342 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C1SI40 Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
   
 0.754
Deba_1682
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010917; KEGG: dds:Ddes_0429 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8J3V6 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
   
 0.753
Deba_2528
COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: dal:Dalk_4068 cobalt transport protein; PFAM: cobalt transport protein; SPTR: B8FM20 Cobalt transport protein; PFAM: Cobalt transport protein.
 
   
 0.751
Deba_2431
TonB family protein; InterPro IPR006260; KEGG: dvm:DvMF_2362 protein TolA; SPTR: Q726K6 TonB protein, putative; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TolA protein; TonB family C-terminal domain.
   
 
 0.700
Deba_0474
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531:IPR010917; KEGG: wsu:WS1416 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; SPTR: Q7MRE4 HUGA; PFAM: TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain.
 
   
 0.653
Deba_1494
Cobyrinic acid ac-diamide synthase; COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: xau:Xaut_0582 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: A7ICU5 Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
  
 
 
 0.595
Deba_1260
KEGG: pca:Pcar_0881 hypothetical protein; SPTR: Q3A671 Putative uncharacterized protein.
  
 
 
 0.581
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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