Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Deba_2530KEGG: rfr:Rfer_2515 hypothetical protein; SPTR: Q21VH1 Putative uncharacterized protein. (149 aa)    
Predicted Functional Partners:
Deba_0464
InterPro IPR004360; KEGG: mac:MA0108 glyoxalase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C0EBN9 Putative uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
 
   
 0.568
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.511
Deba_3153
KEGG: dol:Dole_0758 hypothetical protein; SPTR: A8ZVA7 Putative uncharacterized protein.
  
     0.464
Deba_1308
GCN5-related N-acetyltransferase; InterPro IPR000182:IPR016181; KEGG: bth:BT_1258 putative acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C0D719 Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family.
  
   
 0.431
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
  
  
 0.412
Deba_2221
InterPro IPR011051:IPR013096; KEGG: dal:Dalk_3657 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: B8FGW5 Cupin 2 conserved barrel domain protein; PFAM: Cupin domain.
 
 
 0.411
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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