STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2533Filamentation induced by cAMP protein Fic; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: dde:Dde_0970 fic family protein; PFAM: filamentation induced by cAMP protein Fic; SPTR: Q313X5 Fic family protein; PFAM: Fic/DOC family. (388 aa)    
Predicted Functional Partners:
Deba_0299
KEGG: mca:MCA0835 fic family protein; SPTR: Q60AL5 Fic family protein.
  
     0.770
Deba_2534
Conserved hypothetical protein; COGs: COG3943 Virulence protein; KEGG: mmw:Mmwyl1_4371 hypothetical protein; SPTR: A6W3I7 Putative uncharacterized protein.
       0.609
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 
 0.524
dnaK-2
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 
 0.524
Deba_3031
KEGG: gvi:glr2966 hypothetical protein; SPTR: Q7NCL2 Glr2966 protein.
    
 
 0.524
Deba_2535
COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR011335; KEGG: xcc:XCC2095 DNA helicase related protein; SPTR: Q8P8Y4 DNA helicase related protein; PFAM: Protein of unknown function (DUF3320).
       0.403
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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