STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2538Restriction modification system DNA specificity domain protein; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: dde:Dde_3425 restriction endonuclease S subunits-like; PFAM: restriction modification system DNA specificity domain; SPTR: Q30VS8 Restriction endonuclease S subunits-like; PFAM: Type I restriction modification DNA specificity domain. (411 aa)    
Predicted Functional Partners:
Deba_2540
Site-specific DNA-methyltransferase (adenine-specific); COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002052:IPR003356:IPR002296; KEGG: dde:Dde_3427 type I restriction-modification system methylation subunit-like; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q30VS6 Type I restriction-modification system methylation subunit-like; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM).
 
 0.998
Deba_2542
COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR004546:IPR002052:IPR003356:IPR002296; KEGG: dde:Dde_3429 type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q30VS4 Type I restriction-modification system, M subunit; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM).
 
 0.997
Deba_2537
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.993
Deba_2498
KEGG: npu:Npun_F3155 hypothetical protein; SPTR: B2IYN0 Putative uncharacterized protein.
  
 
 0.950
Deba_2534
Conserved hypothetical protein; COGs: COG3943 Virulence protein; KEGG: mmw:Mmwyl1_4371 hypothetical protein; SPTR: A6W3I7 Putative uncharacterized protein.
  
    0.809
Deba_2536
KEGG: mes:Meso_0222 hypothetical protein; SPTR: D0W8Z4 Putative uncharacterized protein.
       0.686
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.600
atpF
H+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
    
 
 0.570
atpF-2
ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
    
 
 0.570
Deba_2539
KEGG: cch:Cag_1524 DNA-damage-inducible protein D; SPTR: Q3AQE6 DNA-damage-inducible protein D.
       0.560
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.