STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2551KEGG: rsk:RSKD131_4072 hypothetical protein; SPTR: A8U467 Putative uncharacterized protein. (64 aa)    
Predicted Functional Partners:
Deba_2547
COGs: COG4653 phage phi-C31 gp36 major capsid-like protein; InterPro IPR006444; KEGG: pla:Plav_0906 HK97 family phage major capsid protein; PFAM: major capsid protein HK97; SPTR: A7HRJ6 Phage major capsid protein, HK97 family; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family.
       0.554
Deba_2548
Phage prohead protease, HK97 family; COGs: COG3740 Phage head maturation protease; InterPro IPR006433; KEGG: dvl:Dvul_0868 HK97 family phage prohead protease; PFAM: peptidase U35 phage prohead HK97; SPTR: A1VBS3 Phage prohead protease, HK97 family; TIGRFAM: phage prohead protease, HK97 family; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family.
       0.554
Deba_2549
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: dvl:Dvul_0869 HK97 family phage portal protein; PFAM: portal protein; SPTR: A1VBS4 Phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
       0.552
Deba_2550
Terminase; COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: dvl:Dvul_0870 phage terminase; PFAM: Terminase; SPTR: A1VBS5 Phage Terminase; manually curated; PFAM: Phage Terminase.
       0.552
Deba_2546
InterPro IPR013838; KEGG: avi:Avi_6187 hypothetical protein; SPTR: B9K2S4 Putative uncharacterized protein.
       0.544
Deba_2544
COGs: COG5614 Bacteriophage head-tail adaptor; InterPro IPR013045:IPR006453; KEGG: dvl:Dvul_0865 phage head-tail adaptor, putative; PFAM: putative head-tail adaptor protein; SPTR: A1VBS0 Phage head-tail adaptor, putative; TIGRFAM: phage head-tail adaptor; PFAM: Phage head-tail joining protein; TIGRFAM: phage head-tail adaptor, putative, SPP1 family.
       0.448
Deba_2545
InterPro IPR011738; KEGG: dvm:DvMF_1653 phage conserved hypothetical protein, phiE125 gp8; SPTR: B8DS61 Putative uncharacterized protein; PFAM: Phage QLRG family, putative DNA packaging; TIGRFAM: phage conserved hypothetical protein, phiE125 gp8 family; uncharacterized phage protein (possible DNA packaging).
       0.448
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.