STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2552Phage terminase, small subunit, P27 family; COGs: COG3747 Phage terminase small subunit; InterPro IPR006448; KEGG: dvl:Dvul_0871 P27 family phage terminase small subunit; PFAM: terminase small subunit putative P27; SPTR: A1VBS6 Phage terminase, small subunit, putative, P27 family; TIGRFAM: phage terminase, small subunit, P27 family; PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, putative, P27 family. (152 aa)    
Predicted Functional Partners:
Deba_2549
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: dvl:Dvul_0869 HK97 family phage portal protein; PFAM: portal protein; SPTR: A1VBS4 Phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
  
 0.862
Deba_2240
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: dvu:DVU1505 holin, putative; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: C5RJY1 HNH endonuclease; manually curated; PFAM: HNH endonuclease.
 
    0.858
Deba_2587
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: dvu:DVU1502 HK97 family portal protein; PFAM: portal protein; SPTR: Q72BY2 Portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
  
 0.854
Deba_2237
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006944:IPR006427; KEGG: hmo:HM1_2882 phage portal protein, hk97 family; PFAM: portal protein; SPTR: B0N9U4 Putative uncharacterized protein; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
  
 0.853
Deba_1721
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: dvu:DVU1505 holin, putative; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Q72BX9 Holin, putative; manually curated; PFAM: HNH endonuclease.
 
    0.850
Deba_3281
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: emi:Emin_0697 HK97 family phage portal protein; PFAM: portal protein; SPTR: B2KCK6 Phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
  
 0.823
Deba_2550
Terminase; COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: dvl:Dvul_0870 phage terminase; PFAM: Terminase; SPTR: A1VBS5 Phage Terminase; manually curated; PFAM: Phage Terminase.
 
    0.821
Deba_2588
Terminase; COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: dvl:Dvul_0870 phage terminase; PFAM: Terminase; SPTR: A1VBS5 Phage Terminase; PFAM: Phage Terminase.
 
    0.821
Deba_2594
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: dvl:Dvul_0873 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: A1VBS8 HNH endonuclease; PFAM: HNH endonuclease.
 
    0.812
Deba_1722
Terminase; COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: pap:PSPA7_5155 phage terminase, large subunit, putative; PFAM: Terminase; SPTR: A6VBQ6 Phage terminase, large subunit, putative; PFAM: Phage Terminase.
 
    0.804
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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