STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2553Plasmid stabilization system; InterPro IPR007712; KEGG: dma:DMR_25210 hypothetical protein; PFAM: plasmid stabilization system; SPTR: C4XT65 Putative uncharacterized protein; manually curated. (84 aa)    
Predicted Functional Partners:
Deba_2554
InterPro IPR001387:IPR010982; KEGG: dma:DMR_25220 Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C4XT66 Xre family DNA-binding protein; PFAM: Helix-turn-helix.
 
   
 0.951
Deba_2555
Transcriptional regulator, XRE family; InterPro IPR001387:IPR010982; KEGG: geo:Geob_2859 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: B9M286 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix.
 
   
 0.563
Deba_2552
Phage terminase, small subunit, P27 family; COGs: COG3747 Phage terminase small subunit; InterPro IPR006448; KEGG: dvl:Dvul_0871 P27 family phage terminase small subunit; PFAM: terminase small subunit putative P27; SPTR: A1VBS6 Phage terminase, small subunit, putative, P27 family; TIGRFAM: phage terminase, small subunit, P27 family; PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, putative, P27 family.
       0.551
Deba_2591
Transcriptional regulator, XRE family; InterPro IPR001387:IPR010982; KEGG: geo:Geob_2859 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: A4BMI1 Transcriptional regulator, XRE family protein; PFAM: Helix-turn-helix.
 
   
 0.446
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.