STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2554InterPro IPR001387:IPR010982; KEGG: dma:DMR_25220 Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C4XT66 Xre family DNA-binding protein; PFAM: Helix-turn-helix. (114 aa)    
Predicted Functional Partners:
Deba_2553
Plasmid stabilization system; InterPro IPR007712; KEGG: dma:DMR_25210 hypothetical protein; PFAM: plasmid stabilization system; SPTR: C4XT65 Putative uncharacterized protein; manually curated.
 
   
 0.951
Deba_2552
Phage terminase, small subunit, P27 family; COGs: COG3747 Phage terminase small subunit; InterPro IPR006448; KEGG: dvl:Dvul_0871 P27 family phage terminase small subunit; PFAM: terminase small subunit putative P27; SPTR: A1VBS6 Phage terminase, small subunit, putative, P27 family; TIGRFAM: phage terminase, small subunit, P27 family; PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, putative, P27 family.
  
    0.559
Deba_1724
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011010:IPR010998:IPR002104:IPR013762; KEGG: rxy:Rxyl_1592 phage integrase; PFAM: integrase family protein; SPTR: Q1AVM4 Phage integrase; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
 
  
 0.461
Deba_2555
Transcriptional regulator, XRE family; InterPro IPR001387:IPR010982; KEGG: geo:Geob_2859 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: B9M286 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix.
       0.445
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
  
  
 0.407
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.