Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Deba_2555Transcriptional regulator, XRE family; InterPro IPR001387:IPR010982; KEGG: geo:Geob_2859 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: B9M286 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix. (104 aa)    
Predicted Functional Partners:
Deba_2553
Plasmid stabilization system; InterPro IPR007712; KEGG: dma:DMR_25210 hypothetical protein; PFAM: plasmid stabilization system; SPTR: C4XT65 Putative uncharacterized protein; manually curated.
 
   
 0.566
Deba_1139
KEGG: dsa:Desal_2444 hypothetical protein; SPTR: C6BXX0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2867).
  
     0.524
Deba_2546
InterPro IPR013838; KEGG: avi:Avi_6187 hypothetical protein; SPTR: B9K2S4 Putative uncharacterized protein.
  
     0.500
Deba_2554
InterPro IPR001387:IPR010982; KEGG: dma:DMR_25220 Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C4XT66 Xre family DNA-binding protein; PFAM: Helix-turn-helix.
       0.445
Deba_2552
Phage terminase, small subunit, P27 family; COGs: COG3747 Phage terminase small subunit; InterPro IPR006448; KEGG: dvl:Dvul_0871 P27 family phage terminase small subunit; PFAM: terminase small subunit putative P27; SPTR: A1VBS6 Phage terminase, small subunit, putative, P27 family; TIGRFAM: phage terminase, small subunit, P27 family; PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, putative, P27 family.
 
    0.434
Deba_2561
Phage/plasmid primase, P4 family; COGs: COG3378 ATPase; InterPro IPR006500:IPR014818:IPR014015; KEGG: dvl:Dvul_0879 hypothetical protein; PFAM: primase P4; SPTR: A1VBT4 Plasmid/phage primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain.
 
  
 0.425
Deba_2600
Phage/plasmid primase, P4 family; COGs: COG3378 ATPase; InterPro IPR006500:IPR014818:IPR014015; KEGG: dvl:Dvul_0879 hypothetical protein; PFAM: primase P4; SPTR: A1VBT4 Plasmid/phage primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain.
 
  
 0.422
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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