STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2563KEGG: dvl:Dvul_0880 sigma-24 (FecI-like); SPTR: A1VBT5 Sigma-24 (FecI-like); PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (194 aa)    
Predicted Functional Partners:
Deba_2561
Phage/plasmid primase, P4 family; COGs: COG3378 ATPase; InterPro IPR006500:IPR014818:IPR014015; KEGG: dvl:Dvul_0879 hypothetical protein; PFAM: primase P4; SPTR: A1VBT4 Plasmid/phage primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain.
 
 
 0.830
Deba_2569
KEGG: tai:Taci_1503 putative bacteriophage related protein; SPTR: D1B6T4 Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924).
 
   
 0.815
Deba_2607
KEGG: dvl:Dvul_0883 hypothetical protein; SPTR: A1VBT8 Putative uncharacterized protein.
 
     0.781
Deba_0177
KEGG: mta:Moth_2363 putative transmembrane transcriptional regulator (anti-sigma factor); SPTR: Q2RFZ4 Putative transmembrane transcriptional regulator (Anti-sigma factor).
  
 
 0.767
Deba_2610
KEGG: tai:Taci_1503 putative bacteriophage related protein; SPTR: D1B6T4 Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924).
  
   
 0.766
Deba_1835
KEGG: sfu:Sfum_3785 hypothetical protein; SPTR: A0LPV2 Putative uncharacterized protein.
 
     0.753
Deba_1843
KEGG: dde:Dde_1934 putative bacteriophage-related protein; SPTR: Q310B5 Putative bacteriophage-related protein; PFAM: Protein of unknown function (DUF2924).
  
   
 0.747
Deba_2568
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dvl:Dvul_0886 resolvase domain-containing protein; PFAM: Resolvase domain; Recombinase; SPTR: A1VBU1 Resolvase, N-terminal domain; PFAM: Recombinase; Resolvase, N terminal domain.
 
   
 0.746
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.741
Deba_1832
ERCC4 domain protein; COGs: COG1948 ERCC4-type nuclease; InterPro IPR006166:IPR011335:IPR020819; KEGG: sfu:Sfum_3788 ERCC4 domain-containing protein; PFAM: ERCC4 domain protein; SMART: ERCC4 domain protein; SPTR: C6MK29 ERCC4 domain protein.
 
     0.737
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.