STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2566KEGG: dsh:Dshi_3227 hypothetical protein; SPTR: C6MK21 Putative uncharacterized protein. (260 aa)    
Predicted Functional Partners:
Deba_2565
KEGG: dsh:Dshi_3225 hypothetical protein; SPTR: C6MK22 Putative uncharacterized protein.
 
     0.951
Deba_2569
KEGG: tai:Taci_1503 putative bacteriophage related protein; SPTR: D1B6T4 Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924).
 
     0.825
Deba_2568
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dvl:Dvul_0886 resolvase domain-containing protein; PFAM: Resolvase domain; Recombinase; SPTR: A1VBU1 Resolvase, N-terminal domain; PFAM: Recombinase; Resolvase, N terminal domain.
 
     0.808
Deba_2563
KEGG: dvl:Dvul_0880 sigma-24 (FecI-like); SPTR: A1VBT5 Sigma-24 (FecI-like); PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
     0.728
ADK85210.1
KEGG: sfu:Sfum_3775 putative phage-related protein; SPTR: A0LPU2 Putative phage-related protein; tmRNA as predicted by Rfam (RF00023), score 199.67.
 
     0.723
Deba_1843
KEGG: dde:Dde_1934 putative bacteriophage-related protein; SPTR: Q310B5 Putative bacteriophage-related protein; PFAM: Protein of unknown function (DUF2924).
 
     0.719
Deba_1844
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dde:Dde_1935 site-specific recombinase; PFAM: Resolvase domain; Recombinase; SPTR: Q310B4 Site-specific recombinase; PFAM: Recombinase; Resolvase, N terminal domain.
 
     0.668
Deba_2610
KEGG: tai:Taci_1503 putative bacteriophage related protein; SPTR: D1B6T4 Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924).
  
     0.644
Deba_2609
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dvl:Dvul_0886 resolvase domain-containing protein; PFAM: Resolvase domain; Recombinase; SPTR: A1VBU1 Resolvase, N-terminal domain; PFAM: Recombinase; Resolvase, N terminal domain.
 
     0.624
Deba_2602
KEGG: dvl:Dvul_0880 sigma-24 (FecI-like); SPTR: A1VBT5 Sigma-24 (FecI-like); PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
     0.621
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.