STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2600Phage/plasmid primase, P4 family; COGs: COG3378 ATPase; InterPro IPR006500:IPR014818:IPR014015; KEGG: dvl:Dvul_0879 hypothetical protein; PFAM: primase P4; SPTR: A1VBT4 Plasmid/phage primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain. (749 aa)    
Predicted Functional Partners:
Deba_2592
ParB domain protein nuclease; COGs: COG0863 DNA modification methylase; InterProIPR017985:IPR003115:IPR002941:IPR015840:IPR 001091; KEGG: sml:Smlt1882 putative DNA methylase; PFAM: ParB domain protein nuclease; DNA methylase N-4/N-6 domain protein; SMART: ParB domain protein nuclease; SPTR: B2FM38 Putative DNA methylase; PFAM: ParB-like nuclease domain; DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.892
Deba_2602
KEGG: dvl:Dvul_0880 sigma-24 (FecI-like); SPTR: A1VBT5 Sigma-24 (FecI-like); PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
 
 0.816
Deba_2593
ParB domain protein nuclease; COGs: COG0863 DNA modification methylase; InterProIPR002052:IPR003115:IPR002941:IPR015840:IPR 001091; KEGG: dvl:Dvul_0872 nuclease; PFAM: ParB domain protein nuclease; DNA methylase N-4/N-6 domain protein; SMART: ParB domain protein nuclease; SPTR: A1VBS7 ParB domain protein nuclease; PFAM: DNA methylase; ParB-like nuclease domain; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.798
Deba_2556
ParB domain protein nuclease; COGs: COG0863 DNA modification methylase; InterProIPR002052:IPR003115:IPR002941:IPR015840:IPR 001091; KEGG: dvl:Dvul_0872 nuclease; PFAM: ParB domain protein nuclease; DNA methylase N-4/N-6 domain protein; SMART: ParB domain protein nuclease; SPTR: A1VBS7 ParB domain protein nuclease; PFAM: DNA methylase; ParB-like nuclease domain; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.797
Deba_2569
KEGG: tai:Taci_1503 putative bacteriophage related protein; SPTR: D1B6T4 Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924).
 
  
 0.790
Deba_2610
KEGG: tai:Taci_1503 putative bacteriophage related protein; SPTR: D1B6T4 Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924).
 
  
 0.790
Deba_2609
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dvl:Dvul_0886 resolvase domain-containing protein; PFAM: Resolvase domain; Recombinase; SPTR: A1VBU1 Resolvase, N-terminal domain; PFAM: Recombinase; Resolvase, N terminal domain.
 
  
 0.777
Deba_2568
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dvl:Dvul_0886 resolvase domain-containing protein; PFAM: Resolvase domain; Recombinase; SPTR: A1VBU1 Resolvase, N-terminal domain; PFAM: Recombinase; Resolvase, N terminal domain.
 
  
 0.776
Deba_2601
KEGG: dde:Dde_1927 hypothetical protein; SPTR: C6MK25 Putative uncharacterized protein.
       0.773
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.747
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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