STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2615InterPro IPR013429; KEGG: dal:Dalk_2386 regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; SPTR: B8FAZ3 Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family. (81 aa)    
Predicted Functional Partners:
Deba_2614
Protein of unknown function DUF134; COGs: COG1342 DNA-binding protein; InterPro IPR013324:IPR002852; KEGG: dps:DP2820 hypothetical protein; PFAM: protein of unknown function DUF134; SPTR: Q6AJD1 Putative uncharacterized protein; PFAM: Protein of unknown function DUF134; Belongs to the UPF0251 family.
       0.782
Deba_2613
DEAD/DEAH box helicase domain protein; COGs: COG4581 Superfamily II RNA helicase; InterProIPR014001:IPR001650:IPR011545:IPR012961:IPR 014021; KEGG: sfu:Sfum_3369 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DSH domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: A0LNP0 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase; DSHCT (NUC185) domain.
 
     0.647
Deba_0954
Conserved hypothetical protein; InterPro IPR002322; KEGG: dat:HRM2_40490 hypothetical protein; SPTR: C0QC90 Putative uncharacterized protein; PFAM: Class III cytochrome C family.
 
   
 0.599
Deba_2021
KEGG: dal:Dalk_1085 iron-sulfur cluster-binding protein; SPTR: B8F942 Iron-sulfur cluster-binding protein.
  
     0.599
Deba_1483
KEGG: dal:Dalk_0095 hypothetical protein; SPTR: B8FKJ0 Putative uncharacterized protein.
 
     0.559
Deba_0040
KEGG: dol:Dole_2332 histidine kinase A domain-containing protein; SPTR: A8ZV46 Histidine kinase A domain protein.
  
     0.497
Deba_1139
KEGG: dsa:Desal_2444 hypothetical protein; SPTR: C6BXX0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2867).
  
     0.488
Deba_1735
KEGG: sfu:Sfum_2838 hypothetical protein; SPTR: A0LM64 Conserved hypothetical cytosolic protein.
  
     0.483
Deba_0076
Rhodanese domain protein; InterPro IPR001763; KEGG: dba:Dbac_0382 rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: C0GSB7 Rhodanese domain protein; PFAM: Rhodanese-like domain.
  
     0.482
Deba_0124
Type IV pilus assembly PilZ; InterPro IPR009875:IPR003006; KEGG: dvl:Dvul_0573 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: Q728C0 Putative uncharacterized protein; PFAM: PilZ domain.
  
     0.482
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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