STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2627KEGG: dsa:Desal_0666 UspA domain protein; SPTR: A3ZPQ2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3478). (120 aa)    
Predicted Functional Partners:
Deba_2628
TRAP transporter solute receptor, TAXI family; COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: dsa:Desal_0668 TRAP transporter solute receptor, TAXI family; SPTR: C6BYE3 TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family.
       0.586
Deba_2629
Rhodanese domain protein; InterPro IPR001763; KEGG: tgr:Tgr7_0713 rhodanese domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: B8GMH3 Rhodanese domain-containing protein; PFAM: Rhodanese-like domain.
       0.586
Deba_2630
DoxX family protein; InterPro IPR011637; KEGG: cai:Caci_5708 DoxX family protein; PFAM: DoxX family protein; SPTR: C7QCB8 DoxX family protein; PFAM: Methylamine utilisation protein MauE.
       0.586
Deba_2626
KEGG: sse:Ssed_3952 hypothetical protein; SPTR: A8G0D3 Putative uncharacterized protein.
       0.454
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.