STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2628TRAP transporter solute receptor, TAXI family; COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: dsa:Desal_0668 TRAP transporter solute receptor, TAXI family; SPTR: C6BYE3 TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family. (360 aa)    
Predicted Functional Partners:
Deba_2629
Rhodanese domain protein; InterPro IPR001763; KEGG: tgr:Tgr7_0713 rhodanese domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: B8GMH3 Rhodanese domain-containing protein; PFAM: Rhodanese-like domain.
       0.773
Deba_2630
DoxX family protein; InterPro IPR011637; KEGG: cai:Caci_5708 DoxX family protein; PFAM: DoxX family protein; SPTR: C7QCB8 DoxX family protein; PFAM: Methylamine utilisation protein MauE.
       0.773
Deba_0646
TRAP dicarboxylate transporter, DctM subunit; COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR004681:IPR010656; KEGG: dat:HRM2_35000 TRAP-type C4-dicarboxylate transport system, large permease component; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: C0Q966 TRAP-type C4-dicarboxylate transport system, large permease component; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
  
     0.709
Deba_0644
Extracellular solute-binding protein, family 7; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: dsa:Desal_2695 TRAP dicarboxylate transporter-DctP subunit; PFAM: Extracellular solute-binding protein, family 7; SPTR: C6BZB2 TRAP dicarboxylate transporter-DctP subunit; PFAM: Bacterial extracellular solute-binding protein, family 7.
  
   
 0.678
Deba_2627
KEGG: dsa:Desal_0666 UspA domain protein; SPTR: A3ZPQ2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3478).
       0.586
Deba_2993
Acriflavin resistance protein; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dba:Dbac_1782 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: C7LW55 Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.434
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.