STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Deba_26344Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG2768 Uncharacterized Fe-S center protein; InterPro IPR017900:IPR001450:IPR017896; KEGG: dol:Dole_2297 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A8ZV11 4Fe-4S ferredoxin iron-sulfur binding domain protein. (384 aa)    
Predicted Functional Partners:
Deba_1523
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterProIPR009016:IPR001450:IPR007202:IPR010766:IPR 017896:IPR017900; KEGG: dat:HRM2_16550 iron-sulfur binding hydrogenase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; DRTGG domain protein; SPTR: C0QAH8 Iron-sulfur binding hydrogenase; PFAM: Iron only hydrogenase large subunit, C-terminal domain; DRTGG domain; Putative Fe-S cluster; 4Fe-4S binding domain.
 
 
 
 0.833
Deba_2632
Conserved hypothetical protein; COGs: COG0390 ABC-type uncharacterized transport system permease component; InterPro IPR005226; KEGG: dal:Dalk_0328 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: B8F905 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0014); TIGRFAM: conserved hypothetical protein TIGR00245.
  
    0.786
Deba_2870
YYY membrane protein; COGs: COG5427 Uncharacterized membrane protein; InterPro IPR018746; KEGG: cag:Cagg_2106 hypothetical protein; PFAM: YYY membrane protein; SPTR: B8GCE8 Putative uncharacterized protein; PFAM: Uncharacterized membrane protein (DUF2298); TIGRFAM: Chlor_Arch_YYY domain.
   
    0.774
Deba_2633
ABC transporter related protein; COGs: COG4619 ABC-type uncharacterized transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: dvm:DvMF_1728 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B8DM29 ABC transporter related; PFAM: ABC transporter.
       0.768
Deba_0784
COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR012335:IPR012336; KEGG: dal:Dalk_2272 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: B8FIH5 NADH dehydrogenase (Ubiquinone) 24 kDa subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit.
  
 
 0.701
Deba_1526
COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR012336:IPR002023:IPR012335; KEGG: dat:HRM2_16590 NuoE; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: C0QAI2 NuoE; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit.
  
 
 0.701
Deba_2838
COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR012335:IPR012336; KEGG: adg:Adeg_0158 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: C9RAQ3 NADH dehydrogenase (Ubiquinone) 24 kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit.
  
 
 0.701
Deba_2635
KEGG: sfu:Sfum_1300 hypothetical protein; SPTR: A0LHU0 Putative uncharacterized protein.
       0.686
Deba_2636
COGs: COG0642 Signal transduction histidine kinase; InterProIPR003018:IPR003661:IPR003594:IPR009082:IPR 004358:IPR005467; KEGG: gur:Gura_0128 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; SPTR: A5GDK3 Sensor protein; PFAM: GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
       0.631
glgA-2
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
       0.631
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.