STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2646Transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: cpb:Cphamn1_0567 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Q1JWZ4 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (121 aa)    
Predicted Functional Partners:
Deba_2647
Protein-tyrosine phosphatase, low molecular weight; COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: dvl:Dvul_1440 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: C0GLM6 Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin).
  
  
 0.824
Deba_2648
Arsenical-resistance protein; COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR004706:IPR002657; KEGG: sat:SYN_00340 arsenical-resistance protein acr3; PFAM: Bile acid:sodium symporter; SPTR: Q2LXK1 Arsenical-resistance protein acr3; TIGRFAM: arsenical-resistance protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein.
  
  
 0.775
Deba_2645
Protein-tyrosine phosphatase, low molecular weight; COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: dma:DMR_01880 putative arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: C4XG99 Putative arsenate reductase; PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin).
  
  
 0.641
Deba_2649
Thioredoxin domain protein; InterPro IPR012335:IPR012336:IPR013766:IPR017936; KEGG: dat:HRM2_48270 TrxA3; PFAM: Thioredoxin domain; SPTR: C0QID1 TrxA3; PFAM: Thioredoxin; Belongs to the thioredoxin family.
  
  
 0.594
Deba_2650
COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834; KEGG: dol:Dole_2887 cytochrome c biogenesis protein transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: Q30XL8 Putative uncharacterized protein; PFAM: Cytochrome C biogenesis protein transmembrane region.
       0.524
Deba_2651
InterPro IPR011031; KEGG: gme:Gmet_0534 cytochrome c family protein; SPTR: Q1NVK0 Cytochrome c family protein.
     
 0.504
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
  
  
 0.424
Deba_2269
Transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: ank:AnaeK_4017 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Q1K378 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family.
 
     0.408
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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