STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2650COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834; KEGG: dol:Dole_2887 cytochrome c biogenesis protein transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: Q30XL8 Putative uncharacterized protein; PFAM: Cytochrome C biogenesis protein transmembrane region. (234 aa)    
Predicted Functional Partners:
Deba_1369
Thioredoxin domain-containing protein; InterPro IPR012335:IPR012336; KEGG: sfu:Sfum_3604 thioredoxin domain-containing protein; SPTR: A0LPC2 Thioredoxin domain; PFAM: Thioredoxin.
 
 
 0.957
Deba_2649
Thioredoxin domain protein; InterPro IPR012335:IPR012336:IPR013766:IPR017936; KEGG: dat:HRM2_48270 TrxA3; PFAM: Thioredoxin domain; SPTR: C0QID1 TrxA3; PFAM: Thioredoxin; Belongs to the thioredoxin family.
 
 
 
 0.898
Deba_0067
Redoxin domain protein; InterPro IPR013740:IPR017936:IPR012336:IPR012335; KEGG: afe:Lferr_0206 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: C6MAN3 Thioredoxin family protein; PFAM: Redoxin.
  
 
 0.851
Deba_2997
DSBA oxidoreductase; COGs: COG1651 Protein-disulfide isomerase; InterPro IPR001853:IPR012335:IPR012336; KEGG: dma:DMR_06250 DsbA oxidoreductase family protein; PFAM: DSBA oxidoreductase; SPTR: C4XIV2 DSBA oxidoreductase family protein.
  
 
 0.801
Deba_2651
InterPro IPR011031; KEGG: gme:Gmet_0534 cytochrome c family protein; SPTR: Q1NVK0 Cytochrome c family protein.
  
    0.773
Deba_2648
Arsenical-resistance protein; COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR004706:IPR002657; KEGG: sat:SYN_00340 arsenical-resistance protein acr3; PFAM: Bile acid:sodium symporter; SPTR: Q2LXK1 Arsenical-resistance protein acr3; TIGRFAM: arsenical-resistance protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein.
     
 0.636
Deba_2266
Redox-active disulfide protein 2; InterPro IPR012336:IPR012335:IPR005243; KEGG: dol:Dole_2878 redox-active disulfide protein 2; SPTR: A8ZYF6 Redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2; TIGRFAM: small redox-active disulfide protein 2.
 
 
 0.635
Deba_2267
Conserved hypothetical protein; InterPro IPR012336:IPR012335; KEGG: sfu:Sfum_3389 hypothetical protein; SPTR: A0LNR0 Putative uncharacterized protein.
 
 
 0.632
Deba_2646
Transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: cpb:Cphamn1_0567 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Q1JWZ4 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family.
       0.565
Deba_2652
KEGG: pcsk1; proprotein convertase subtilisin/kexin type 1; K01359 proprotein convertase subtilisin/kexin type 1; SPTR: Q1NKB7 Putative uncharacterized protein.
       0.561
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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