STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2671Protein of unknown function UPF0153; InterPro IPR005358; KEGG: sfu:Sfum_2545 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: A0LLC1 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153). (284 aa)    
Predicted Functional Partners:
Deba_2670
PHP domain protein; COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR003141:IPR016195:IPR004013; KEGG: pca:Pcar_1215 hypothetical protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: Q1NUX2 PHP-like; PFAM: PHP domain.
       0.746
Deba_2047
Conserved hypothetical protein; InterPro IPR016024:IPR011989; KEGG: dal:Dalk_2376 hypothetical protein; SPTR: Q1NTE0 HEAT.
  
   
 0.705
Deba_3067
KEGG: sfu:Sfum_0040 hypothetical protein; SPTR: A0LE91 Putative uncharacterized protein.
  
     0.692
Deba_0070
Hypothetical protein; InterPro IPR017896:IPR017900; KEGG: sfu:Sfum_3217 hypothetical protein; SPTR: A0LN88 Putative uncharacterized protein.
  
     0.678
miaB
RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.672
Deba_0955
InterPro IPR001450:IPR017900:IPR017896; KEGG: dba:Dbac_0275 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C7LUW8 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain.
  
     0.670
Deba_2669
Protein of unknown function DUF151; COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: dal:Dalk_2411 protein of unknown function DUF151; PFAM: protein of unknown function DUF151; SPTR: B8FB18 Putative uncharacterized protein; PFAM: Uncharacterised ACR, COG1259.
       0.660
Deba_1223
KEGG: dal:Dalk_0401 hypothetical protein; SPTR: B8FH22 Putative uncharacterized protein; PFAM: Rho termination factor, N-terminal domain.
  
     0.637
Deba_0055
UspA domain protein; InterPro IPR006016:IPR006015:IPR014729; KEGG: dol:Dole_1330 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZYM9 UspA domain protein; PFAM: Universal stress protein family.
  
     0.633
Deba_1699
KEGG: sfu:Sfum_4024 hypothetical protein; SPTR: A0LQI8 Putative uncharacterized protein.
  
     0.630
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.