STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2674InterPro IPR015391:IPR000297; KEGG: dat:HRM2_18710 PpiD1; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; SPTR: C0QBW0 PpiD1; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain. (649 aa)    
Predicted Functional Partners:
Deba_1627
SurA domain protein; InterPro IPR015391:IPR000297; KEGG: sat:SYN_02487 peptidyl-prolyl cis-trans isomerase; PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: Q2LRQ8 Peptidyl-prolyl cis-trans isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain.
 
  
 0.725
Deba_2678
PP-loop domain protein; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR014729:IPR011063:IPR012089; KEGG: sfu:Sfum_1613 PP-loop domain-containing protein; PFAM: PP-loop domain protein; SPTR: A0LIP8 PP-loop domain protein; PFAM: PP-loop family; Belongs to the TtcA family.
 
  
 0.719
Deba_2675
Protein of unknown function UPF0066; COGs: COG1720 conserved hypothetical protein; InterPro IPR001378:IPR002177; KEGG: mla:Mlab_1087 sodium-transporting two-sector ATPase; PFAM: protein of unknown function UPF0066; SPTR: A2SSF0 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0066; TIGRFAM: conserved hypothetical protein TIGR00104.
  
    0.650
Deba_2676
InterPro IPR001497; KEGG: sfu:Sfum_2405 hypothetical protein; SPTR: A0LKY4 Conserved hypothetical cytosolic protein.
       0.648
Deba_2677
Beta-lactamase domain protein; COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: adg:Adeg_1793 beta-lactamase domain protein; SPTR: C9R9A2 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily.
       0.645
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
       0.645
Deba_1941
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 0.629
yidC
Membrane protein insertase, YidC/Oxa1 family; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
  
 0.601
Deba_0689
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.599
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
 
 
 
 0.595
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.