Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Deba_2678PP-loop domain protein; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR014729:IPR011063:IPR012089; KEGG: sfu:Sfum_1613 PP-loop domain-containing protein; PFAM: PP-loop domain protein; SPTR: A0LIP8 PP-loop domain protein; PFAM: PP-loop family; Belongs to the TtcA family. (256 aa)    
Predicted Functional Partners:
Deba_2676
InterPro IPR001497; KEGG: sfu:Sfum_2405 hypothetical protein; SPTR: A0LKY4 Conserved hypothetical cytosolic protein.
       0.786
Deba_2675
Protein of unknown function UPF0066; COGs: COG1720 conserved hypothetical protein; InterPro IPR001378:IPR002177; KEGG: mla:Mlab_1087 sodium-transporting two-sector ATPase; PFAM: protein of unknown function UPF0066; SPTR: A2SSF0 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0066; TIGRFAM: conserved hypothetical protein TIGR00104.
       0.773
Deba_2677
Beta-lactamase domain protein; COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: adg:Adeg_1793 beta-lactamase domain protein; SPTR: C9R9A2 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily.
       0.773
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
    0.773
Deba_2674
InterPro IPR015391:IPR000297; KEGG: dat:HRM2_18710 PpiD1; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; SPTR: C0QBW0 PpiD1; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain.
 
  
 0.720
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
  
 0.661
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.633
Deba_3171
UBA/THIF-type NAD/FAD binding protein; COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR009036:IPR000594:IPR016040; KEGG: reh:H16_A1870 ThiF/MoeB/HesA family protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: A1HS23 UBA/THIF-type NAD/FAD binding protein; PFAM: ThiF family.
 
 
 0.607
Deba_1477
Conserved hypothetical protein; COGs: COG1606 ATP-utilizing protein of the PP-loop superfamily; InterPro IPR005232:IPR014729; KEGG: pca:Pcar_2431 hypothetical protein; SPTR: Q3A1T7 Putative uncharacterized protein; PFAM: Asparagine synthase; TIGRFAM: conserved hypothetical protein TIGR00268.
 
    0.557
trmB
Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.525
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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