STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2683KEGG: dma:DMR_22260 hypothetical protein; SPTR: C4XSM0 Putative uncharacterized protein. (205 aa)    
Predicted Functional Partners:
Deba_2681
Nickel transport complex, NikM subunit, transmembrane; COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: dat:HRM2_23190 CbiP; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: C0QES2 CbiP; PFAM: Nickel uptake substrate-specific transmembrane region.
 
  
  0.990
Deba_0542
Nickel transport complex, NikM subunit, transmembrane; COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: dal:Dalk_2736 hypothetical protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: B8FKQ6 Putative uncharacterized protein; PFAM: Nickel uptake substrate-specific transmembrane region.
 
  
  0.978
Deba_2682
Cobalamin (vitamin B12) biosynthesis CbiM protein; COGs: COG0310 ABC-type Co2+ transport system permease component; InterPro IPR002751; KEGG: dvm:DvMF_3139 cobalt transport protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; SPTR: B8DND3 Cobalamin (Vitamin B12) biosynthesis CbiM protein; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM.
    0.966
Deba_2684
Cobalt ABC transporter, inner membrane subunit CbiQ; COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR012809:IPR003339; KEGG: dvm:DvMF_3138 cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; SPTR: B8DND2 Cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.
 
     0.930
Deba_2685
ABC transporter related protein; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: rsq:Rsph17025_3433 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A4WY46 Putative uncharacterized protein; PFAM: ABC transporter.
 
     0.929
Deba_1641
Cobalamin (vitamin B12) biosynthesis CbiM protein; COGs: COG0310 ABC-type Co2+ transport system permease component; InterPro IPR002751; KEGG: dvl:Dvul_1936 cobalt transport protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; SPTR: A1VET6 Cobalamin (Vitamin B12) biosynthesis CbiM protein; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM.
    0.866
Deba_3107
Hypothetical protein; InterPro IPR006624; KEGG: scl:sce9098 hypothetical protein; SPTR: A9GA14 Putative uncharacterized protein.
    
 0.853
Deba_2680
KEGG: pca:Pcar_0881 hypothetical protein; SPTR: Q3A671 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3573).
 
     0.569
nrdR
ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.514
Deba_2686
KEGG: ilo:IL0280 hypothetical protein; SPTR: Q5QUM7 Uncharacterized conserved protein; PFAM: SprA-related family.
       0.498
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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