STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2724Hypothetical protein; InterPro IPR006162; KEGG: gsu:GSU0336 hypothetical protein; SPTR: Q74GB0 Putative uncharacterized protein; PFAM: Putative F0F1-ATPase subunit (ATPase_gene1). (94 aa)    
Predicted Functional Partners:
Deba_2725
ATP synthase I; InterPro IPR008413; KEGG: dal:Dalk_2857 ATP synthase I; PFAM: ATP synthase I; SPTR: B8FBA3 ATP synthase I; PFAM: ATP synthase I chain.
 
    0.948
atpB-2
ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
 
  
 0.838
Deba_1085
MJ0042 family finger-like protein; InterPro IPR011723; KEGG: dma:DMR_21170 hypothetical protein; SPTR: C4XS86 Putative uncharacterized protein; TIGRFAM: MJ0042 family finger-like protein; TIGRFAM: MJ0042 family finger-like domain.
  
     0.710
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
 
  
 0.707
Deba_0954
Conserved hypothetical protein; InterPro IPR002322; KEGG: dat:HRM2_40490 hypothetical protein; SPTR: C0QC90 Putative uncharacterized protein; PFAM: Class III cytochrome C family.
  
     0.692
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.670
Deba_1958
Protein of unknown function DUF1239; InterPro IPR010664; KEGG: pca:Pcar_1941 hypothetical protein; PFAM: protein of unknown function DUF1239; SPTR: Q3A375 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239).
  
     0.650
Deba_2215
COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: drt:Dret_0273 molybdopterin oxidoreductase, transmembrane subunit, putative; PFAM: Polysulphide reductase NrfD; SPTR: C8WZV0 Molybdopterin oxidoreductase, transmembrane subunit; PFAM: Polysulphide reductase, NrfD.
 
     0.582
atpF
H+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
 
  
 0.581
Deba_2113
KEGG: sfu:Sfum_0116 hypothetical protein; SPTR: Q2LR31 Hypothetical cytosolic protein.
  
     0.576
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.