STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2735Hypothetical protein; KEGG: pca:Pcar_2208 peptidoglycan synthetase; SPTR: C4RDQ9 Putative uncharacterized protein. (392 aa)    
Predicted Functional Partners:
Deba_2733
Hypothetical protein; InterPro IPR008979; KEGG: lpj:JDM1_0171 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; SPTR: Q88ZW2 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
       0.773
Deba_2734
Hypothetical protein; KEGG: Ehmt2; euchromatic histone lysine N-methyltransferase 2; K11420 euchromatic histone-lysine N-methyltransferase; SPTR: A2CG74 Euchromatic histone lysine N-methyltransferase 2.
       0.773
Deba_2736
KEGG: cpi:Cpin_6628 hypothetical protein; SPTR: C7PMC7 Putative uncharacterized protein.
       0.746
Deba_2737
KEGG: SNF2 superfamily protein; SPTR: A8IM60 Silk fibroin.
       0.726
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).
       0.417
Deba_2732
Glutaredoxin; InterPro IPR002109:IPR012335:IPR012336; KEGG: rrs:RoseRS_1323 YruB family glutaredoxin-like protein; PFAM: glutaredoxin; SPTR: A5USX4 Glutaredoxin-like protein, YruB-family; PFAM: Glutaredoxin.
       0.417
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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