STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2750KEGG: dol:Dole_0676 hypothetical protein; SPTR: A8ZUS3 Putative uncharacterized protein. (96 aa)    
Predicted Functional Partners:
Deba_2749
Protein of unknown function DUF2143; InterPro IPR019222; KEGG: drt:Dret_1951 MJ0042 family finger-like protein; PFAM: Protein of unknown function DUF2143; SPTR: C0GMP0 MJ0042 family finger-like protein; PFAM: Yip1 domain.
       0.790
Deba_2751
ANTAR domain protein with unknown sensor; InterPro IPR005561:IPR011991:IPR011006; KEGG: bgl:bglu_2g09980 response regulator NasT; PFAM: ANTAR domain protein; SPTR: C5AHM2 Response regulator NasT; PFAM: ANTAR domain.
       0.517
Deba_2748
COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_2036 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FG52 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme.
       0.422
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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